LEVEL TAXA ADDITIVE ASSIGNED superkingdom Bacteria 1813 superkingdom Viruses 27 phylum Proteobacteria 1763 phylum Firmicutes 24 phylum Actinobacteria 16 phylum Spirochaetes 5 phylum Tenericutes 2 phylum Cyanobacteria 2 phylum Bacteroidetes 1 class Gammaproteobacteria 1641 class Betaproteobacteria 113 class Bacilli 24 class Actinobacteria 16 class Spirochaetia 5 class Alphaproteobacteria 5 class Deltaproteobacteria 4 class Mollicutes 2 order Enterobacteriales 1582 order Burkholderiales 113 order Alteromonadales 56 order Lactobacillales 23 order Actinomycetales 16 order Picornavirales 11 order Spirochaetales 5 order Rhizobiales 4 order Myxococcales 4 order Herpesvirales 3 order Caudovirales 2 order Mycoplasmatales 2 order Pseudomonadales 2 order Tymovirales 1 order Bacillales 1 order Nostocales 1 order Sphingomonadales 1 order Oscillatoriales 1 order Bacteroidetes Order II. Incertae sedis 1 order Aeromonadales 1 family Enterobacteriaceae 1582 family Alcaligenaceae 98 family Alteromonadaceae 55 family Streptococcaceae 23 family Picornaviridae 11 family Comamonadaceae 10 family Streptomycetaceae 7 family Mycobacteriaceae 6 family Spirochaetaceae 5 family Burkholderiaceae 5 family Partitiviridae 5 family Polyangiaceae 4 family Methylobacteriaceae 3 family Mycoplasmataceae 2 family Flaviviridae 2 family Glycomycetaceae 2 family Pseudomonadaceae 2 family Herpesviridae 2 family Alloherpesviridae 1 family Paenibacillaceae 1 family Rhizobiaceae 1 family Sphingomonadaceae 1 family Microviridae 1 family Geodermatophilaceae 1 family Siphoviridae 1 family Shewanellaceae 1 family Rhodothermaceae 1 family Tymoviridae 1 family Nostocaceae 1 family Aeromonadaceae 1 family Myoviridae 1 genus Escherichia 1424 genus Shigella 146 genus Achromobacter 97 genus Alteromonas 55 genus Streptococcus 23 genus Cardiovirus 11 genus Delftia 10 genus Streptomyces 7 genus Salmonella 7 genus Mycobacterium 6 genus Burkholderia 5 genus Sorangium 4 genus Treponema 4 genus Betapartitivirus 4 genus Methylobacterium 3 genus Stackebrandtia 2 genus Pseudomonas 2 genus Hepacivirus 2 genus Mycoplasma 2 genus Klebsiella 2 genus Aeromonas 1 genus Lambdalikevirus 1 genus Citrobacter 1 genus Tymovirus 1 genus Enterobacter 1 genus Rhodothermus 1 genus Paenibacillus 1 genus Sphaerochaeta 1 genus Crinalium 1 genus Sphingomonas 1 genus Modestobacter 1 genus Bordetella 1 genus Shewanella 1 genus Microvirus 1 genus Anabaena 1 genus Rhizobium 1 genus Simplexvirus 1 genus Cyprinivirus 1 species Escherichia coli 1417 species Achromobacter xylosoxidans 97 species Alteromonas macleodii 55 species Shigella flexneri 54 species Shigella sonnei 41 species Shigella boydii 37 species Streptococcus suis 23 species Shigella dysenteriae 14 species Encephalomyocarditis virus 11 11 species Escherichia fergusonii 7 species Delftia acidovorans 7 species Salmonella enterica 7 species Mycobacterium tuberculosis 5 species Burkholderia mallei 5 species Treponema primitia 4 species Sorangium cellulosum 4 species Streptomyces bingchenggensis 4 species Methylobacterium extorquens 3 species Pleurotus ostreatus virus 1 3 3 species Delftia sp. Cs1-4 3 3 species Streptomyces cattleya 2 species Klebsiella pneumoniae 2 species Pseudomonas sp. TKP 2 2 species Hepatitis C virus 2 species Mycoplasma hyopneumoniae 2 species Phytophthora infestans RNA virus 1 2 2 species Stackebrandtia nassauensis 2 species Enterobacteria phage lambda 1 1 species Shewanella sp. ANA-3 1 1 species Rhodothermus marinus 1 species Modestobacter marinus 1 1 species Caviid herpesvirus 2 1 1 species Crinalium epipsammum 1 species Sphingomonas sp. MM-1 1 1 species Anabaena cylindrica 1 species Enterobacteria phage phiX174 sensu lato 1 1 species Rhizobium sp. IRBG74 1 1 species Enterobacter aerogenes 1 species Sphaerochaeta coccoides 1 species Dulcamara mottle virus 1 1 species Aeromonas hydrophila 1 species Streptomyces albus 1 species Mycobacterium ulcerans 1 species Primula malacoides virus 1 1 species Cyprinid herpesvirus 1 1 1 species Citrobacter rodentium 1 species Bordetella bronchiseptica 1 species Dill cryptic virus 1 1 1 species Enterobacteriaceae bacterium strain FGI 57 1 1 species Cercopithecine herpesvirus 2 1 1 species Shigella phage SfIV 1 1 species Paenibacillus mucilaginosus 1 strain Escherichia coli DH1 136 136 strain Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 97 97 strain Escherichia coli str. K-12 substr. MG1655 91 91 strain Escherichia coli str. K-12 substr. DH10B 80 80 strain Escherichia coli str. K-12 substr. W3110 67 67 strain Escherichia coli BW2952 64 64 strain Escherichia coli BL21(DE3) 58 58 strain Alteromonas macleodii str. 'Ionian Sea U8' 55 55 strain Escherichia coli str. K-12 substr. MDS42 52 52 strain Escherichia coli KO11FL 41 41 strain Escherichia coli W 39 39 strain Escherichia coli P12b 35 35 strain Escherichia coli ETEC H10407 34 34 strain Escherichia coli UMNK88 33 33 strain Escherichia coli SE11 30 30 strain Escherichia coli B str. REL606 28 28 strain Escherichia coli O104:H4 str. 2009EL-2071 27 27 strain Escherichia coli ATCC 8739 25 25 strain Escherichia coli 'BL21-Gold(DE3)pLysS AG' 24 24 strain Escherichia coli HS 24 24 strain Escherichia coli O103:H2 str. 12009 24 24 strain Escherichia coli O26:H11 str. 11368 22 22 strain Escherichia coli O157:H7 str. EC4115 22 22 strain Shigella boydii Sb227 22 22 strain Streptococcus suis JS14 22 22 strain Shigella sonnei Ss046 21 21 strain Escherichia coli Xuzhou21 20 20 strain Shigella sonnei 53G 20 20 strain Escherichia coli O111:H- str. 11128 20 20 strain Shigella flexneri 2a str. 2457T 20 20 strain Escherichia coli UMN026 19 19 strain Escherichia coli APEC O78 19 19 strain Escherichia coli O157:H7 str. Sakai 19 19 strain Escherichia coli S88 19 19 strain Escherichia coli LY180 17 17 strain Escherichia coli O157:H7 str. TW14359 17 17 strain Escherichia coli O104:H4 str. 2009EL-2050 17 17 strain Escherichia coli O104:H4 str. 2011C-3493 16 16 strain Escherichia coli O55:H7 str. CB9615 16 16 strain Escherichia coli NA114 16 16 strain Escherichia coli O55:H7 str. RM12579 15 15 strain Escherichia coli 55989 15 15 strain Shigella boydii CDC 3083-94 15 15 strain Escherichia coli O157:H7 str. EDL933 15 15 strain Escherichia coli E24377A 15 15 strain Escherichia coli str. 'clone D i14' 14 14 strain Shigella dysenteriae Sd197 14 14 strain Shigella flexneri 2002017 14 14 strain Escherichia coli IAI1 13 13 strain Escherichia coli JJ1886 11 11 strain Escherichia coli IHE3034 11 11 strain Escherichia coli O127:H6 str. E2348/69 11 11 strain Shigella flexneri 5 str. 8401 10 10 strain Escherichia coli APEC O1 10 10 strain Shigella flexneri 2a str. 301 10 10 strain Escherichia coli IAI39 9 9 strain Escherichia coli O7:K1 str. CE10 9 9 strain Escherichia coli 042 9 9 strain Escherichia coli O83:H1 str. NRG 857C 9 9 strain Escherichia coli SMS-3-5 9 9 strain Escherichia coli 536 8 8 strain Escherichia coli UM146 8 8 strain Escherichia coli SE15 8 8 strain Escherichia coli ABU 83972 8 8 strain Escherichia fergusonii ATCC 35469 7 7 strain Escherichia coli PMV-1 7 7 strain Escherichia coli UTI89 7 7 strain Escherichia coli CFT073 7 7 strain Delftia acidovorans SPH-1 7 7 strain Escherichia coli ED1a 6 6 strain Escherichia coli str. 'clone D i2' 6 6 strain Escherichia coli LF82 6 6 strain Mycobacterium tuberculosis KZN 1435 5 5 strain Burkholderia mallei NCTC 10229 4 4 strain Streptomyces bingchenggensis BCW-1 4 4 strain Treponema primitia ZAS-2 4 4 strain Sorangium cellulosum So0157-2 4 4 strain Methylobacterium extorquens DM4 3 3 strain Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1 2 2 strain Streptomyces cattleya NRRL 8057 = DSM 46488 2 2 strain Hepatitis C virus genotype 2 2 2 strain Mycoplasma hyopneumoniae J 2 2 strain Stackebrandtia nassauensis DSM 44728 2 2 strain Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 1 1 strain Enterobacter aerogenes KCTC 2190 1 1 strain Primula malacoides virus China/Mar2007 1 1 strain Rhodothermus marinus SG0.5JP17-172 1 1 strain Mycobacterium ulcerans Agy99 1 1 strain Aeromonas hydrophila ML09-119 1 1 strain Salmonella enterica subsp. enterica serovar Typhi str. CT18 1 1 strain Crinalium epipsammum PCC 9333 1 1 strain Anabaena cylindrica PCC 7122 1 1 strain Klebsiella pneumoniae subsp. pneumoniae HS11286 1 1 strain Salmonella enterica subsp. enterica serovar Pullorum str. S06004 1 1 strain Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 1 1 strain Paenibacillus mucilaginosus K02 1 1 strain Streptomyces albus J1074 1 1 strain Streptococcus suis D12 1 1 strain Bordetella bronchiseptica RB50 1 1 strain Salmonella enterica subsp. enterica serovar Agona str. 24249 1 1 strain Burkholderia mallei NCTC 10247 1 1 strain Klebsiella pneumoniae CG43 1 1 strain Citrobacter rodentium ICC168 1 1 strain Sphaerochaeta coccoides DSM 17374 1 1 replicon 568125122 97 97 replicon 556503834 91 91 replicon 170079663 80 80 replicon 387619774 79 79 replicon 388476123 67 67 replicon 238899406 64 64 replicon 386593590 57 57 replicon 522588077 55 55 replicon 471332236 52 52 replicon 386703215 35 35 replicon 387610477 34 34 replicon 386612163 33 33 replicon 387825439 32 32 replicon 209917191 30 30 replicon 254160123 28 28 replicon 407466711 27 27 replicon 387823261 26 26 replicon 170018061 25 25 replicon 378710836 25 25 replicon 253771435 24 24 replicon 157159467 24 24 replicon 260842239 24 24 replicon 82542618 22 22 replicon 386578980 22 22 replicon 260853213 22 22 replicon 209395693 22 22 replicon 74310614 21 21 replicon 386607309 21 21 replicon 377520096 20 20 replicon 30061571 20 20 replicon 387880559 20 20 replicon 260866153 20 20 replicon 560154719 20 20 replicon 443615330 19 19 replicon 15829254 19 19 replicon 218703261 19 19 replicon 386707734 18 18 replicon 254791136 17 17 replicon 544388862 17 17 replicon 410480139 17 17 replicon 407479587 16 16 replicon 386698504 16 16 replicon 386617516 16 16 replicon 291280824 16 16 replicon 187730020 15 15 replicon 387504934 15 15 replicon 16445223 15 15 replicon 157154711 15 15 replicon 218693476 15 15 replicon 386632422 14 14 replicon 384541581 14 14 replicon 82775382 14 14 replicon 218552585 13 13 replicon 218556939 13 13 replicon 9626692 11 11 replicon 556550243 11 11 replicon 215485161 11 11 replicon 386597751 11 11 replicon 110804074 10 10 replicon 344915202 10 10 replicon 170679574 9 9 replicon 386622414 9 9 replicon 117622295 9 9 replicon 387615344 9 9 replicon 218698419 9 9 replicon 387605479 9 9 replicon 386637352 8 8 replicon 387828053 8 8 replicon 110640213 8 8 replicon 386602643 8 8 replicon 218547440 7 7 replicon 544574430 7 7 replicon 26245917 7 7 replicon 160895450 7 7 replicon 91209055 7 7 replicon 386627502 6 6 replicon 218534477 6 6 replicon 222154829 6 6 replicon 218687878 6 6 replicon 253796915 5 5 replicon 333996462 4 4 replicon 374982757 4 4 replicon 521458881 4 4 replicon 124383319 4 4 replicon 254558653 3 3 replicon 62401661 3 3 replicon 333911667 3 3 replicon 568136993 2 2 replicon 71893359 2 2 replicon 157781212 2 2 replicon 291297538 2 2 replicon 357407371 2 2 replicon 528816716 2 2 replicon 470211964 1 1 replicon 330835983 1 1 replicon 157418083 1 1 replicon 378982542 1 1 replicon 440679730 1 1 replicon 56694721 1 1 replicon 549728080 1 1 replicon 529218781 1 1 replicon 563651606 1 1 replicon 117918459 1 1 replicon 507519518 1 1 replicon 378976159 1 1 replicon 126447966 1 1 replicon 555928251 1 1 replicon 270358328 1 1 replicon 9626372 1 1 replicon 82524281 1 1 replicon 440285501 1 1 replicon 422933554 1 1 replicon 557307526 1 1 replicon 33598993 1 1 replicon 345301888 1 1 replicon 389861738 1 1 replicon 386585202 1 1 replicon 118615919 1 1 replicon 428303693 1 1 replicon 270358330 1 1 replicon 9626243 1 1 replicon 255987650 1 1 replicon 379699217 1 1 replicon 511628970 1 1 replicon 448824857 1 1 replicon 550443072 1 1 replicon 283783779 1 1 replicon 478686601 1 1 replicon 336246508 1 1 replicon 480527847 1 1 replicon 16758993 1 1